Article :: Publications
Publié par Olivier Troccaz
jeudi 09 juin 2016 - 14:40:00

Publications 2017


Personnel Plate-Forme :

Amandine Lê Van, Achim Quaiser, Marie Duhamel, Sophie Michon-Coudouel, Alexis Dufresne and Philippe Vandenkoornhuyse - Ecophylogeny of the endospheric root fungal microbiome of co-occurring Agrostis stolonifera - Published online 2017 Jun 8. doi:  10.7717/peerj.3454 - PMCID: PMC5466812 - PeerJ. 2017; 5: e3454.
 
Kammerer-Jacquet SF, Brunot A, Pladys A, Bouzille G, Dagher J, Medane S, Peyronnet B, Mathieu R, Verhoest G, Bensalah K, Edeline J, Laguerre B, Lespagnol A, Mosser J, Dugay F, Belaud-Rotureau MA, Rioux-Leclercq N. - Synchronous Metastatic Clear-Cell Renal Cell Carcinoma: A Distinct Morphologic, Immunohistochemical, and Molecular Phenotype. Clin Genitourin Cancer. 2017 Feb;15(1):e1-e7. doi: 10.1016/j.clgc.2016.06.007.
 
Guibert N, Barlesi F, Descourt R, Léna H, Besse B, Beau-Faller M, Mosser J, Pichon E, Merlio JP, Ouafik L, Guichard F, Mastroianni B, Moreau L, Wdowik A, Sabourin JC, Lemoine A, Missy P, Langlais A, Moro-Sibilot D, Mazieres J. - Characteristics and Outcomes of Patients with Lung Cancer Harboring Multiple Molecular Alterations: Results from the IFCT Study Biomarkers France. J Thorac Oncol. 2017 Feb 9. pii: S1556-0864(17)30097-7. doi: 10.1016/j.jtho.2017.02.001.

Kammerer-Jacquet SF, Crouzet L, Brunot A, Dagher J, Pladys A, Edeline J, Laguerre B, Peyronnet B, Mathieu R, Verhoest G, Patard JJ, Lespagnol A, Mosser J, Denis M, Messai Y9, Gad-Lapiteau S, Chouaib S, Belaud-Rotureau MA, Bensalah K, Rioux-Leclercq N. - Independent association of PD-L1 expression with noninactivated VHL clear cell renal cell carcinoma-A finding with therapeutic potential. Int J Cancer. 2017 Jan 1;140(1):142-148. doi: 10.1002/ijc.30429

Plate-forme citée ou remerciée :
 
Julie Bronsard, Gaetan Pascreau, Mohamed Sassi, Tony Mauro, Yoann Augagneur  and Brice Felden - sRNA and cis-antisense sRNA identification in Staphylococcus aureus highlights an unusual sRNA gene cluster with one encoding a secreted peptide - Published online 2017 Jul 4. doi:  10.1038/s41598-017-04786-3 - PMCID: PMC5496865 - Sci Rep. 2017; 7: 4565.

Mahé EA, Madigou T, Sérandour AA, Bizot M, Avner S, Chalmel F, Palierne G, Métivier R, Salbert G. - Cytosine modifications modulate the chromatin architecture of transcriptional enhancers. Genome Res. 2017 Apr 10. pii: gr.211466.116. doi: 10.1101/gr.211466.116.

 

Publications 2016


Personnel Plate-Forme :

Caillot O, Aubry M, Duros S, Boyer L, Van Valenberg C, Levêque J, Lavoué V (2016) - Impact of the French 3rd and 4th generation pill scare in women seeking termination of pregnancy. J Gynecol Obstet Biol Reprod (Paris). pii: S0368-2315(16)30010-2. doi: 10.1016/j.jgyn.2016.03.014.

Bonnin N, Armandy E, Carras J, Ferrandon S, Battiston-Montagne P, Aubry M, Guihard S7, Meyronet D, Foy JP, Saintigny P, Ledrappier S, Jung A, Rimokh R, Rodriguez-Lafrasse C, Poncet D (2016) - MiR-422a promotes loco-regional recurrence by targeting NT5E/CD73 in head and neck squamous cell carcinoma. Oncotarget. 2016 Jul 12;7(28):44023-44038. doi: 10.18632/oncotarget.9829.


Plate-forme citée ou remerciée :

Sulpice L, Desille M, Turlin B, Fautrel A, Boudjema K, Clément B, and Coulouarn C (2016) - Gene expression profiling of the tumor microenvironment in human intrahepatic cholangiocarcinoma. Genom Data.; 7: 229–232. doi:  10.1016/j.gdata.2016.01.012. PMCID: PMC4778675

Ballaud F, Dufresne A, Francez A-J, Colombet J, Sime-Ngando T and Quaiser A (2016) - Dynamics of Viral Abundance and Diversity in a Sphagnum-Dominated Peatland: Temporal Fluctuations Prevail Over Habitat. Front. Microbiol. 6:1494. doi: 10.3389/fmicb.2015.01494

Yonis Soubere Mahamoud, Meziane Aite, Catherine Martin, Maxim Zhadobov, Ronan Sauleau, Yves Le Dréan, Denis Habauzit (2016) - Additive Effects of Millimeter Waves and 2-Deoxyglucose Co-Exposure on the Human Keratinocyte Transcriptome. PLOS ONE doi:10.1371/journal.pone.0160810 - PDF
Mebarki S, Désert R, Sulpice L, Sicard M, Desille M, Canal F, Dubois-Pot Schneider H, Bergeat D, Turlin B, Bellaud P, Lavergne E, Le Guével R, Corlu A, Perret C, Coulouarn C, Clément B, Musso O (2016) - De novo HAPLN1 expression hallmarks Wnt-induced stem cell and fibrogenic networks leading to aggressive human hepatocellular carcinomas. Oncotarget. 2016 Jun 28;7(26):39026-39043. doi: 10.18632/oncotarget.9346.

 

Publications 2015


Personnel Plate-Forme :

Aubry M, de Tayrac M, Etcheverry A, Clavreul A, Saikali S, Menei P, Mosser J. (2015) - From the core to beyond the margin: a genomic picture of glioblastoma intratumor heterogeneity. Oncotarget.;6(14):12094-109.

Ben Maamar S, Aquilina L, Quaiser A, Pauwels H, Michon-Coudouel S, Vergnaud-Ayraud V, Labasque T, Roques C, Abbott BW and Dufresne A (2015) - Groundwater Isolation Governs Chemistry and Microbial Community Structure along Hydrologic Flowpaths. Front. Microbiol. 6:1457. doi: 10.3389/fmicb.2015.01457

Lemée JM, Clavreul A, Aubry M, Com E, de Tayrac M, Eliat PA, Henry C, Rousseau A, Mosser J, Menei P. (2015) - Characterizing the peritumoral brain zone in glioblastoma: a multidisciplinary analysis. J Neurooncol. ;122(1):53-61. doi: 10.1007/s11060-014-1695-8.

Rousseau-Gueutin M, Bellot S, Martin G.E, Boutte J, Chelaifa H, Lima O, Michon-Coudouel S, Naquin D, Salmon A, Ainouche K, Ainouche M. (2015) - The chloroplast genome of the hexaploid Spartina maritima (Poaceae, Chloridoideae): Comparative analyses and molecular dating. Molecular Phylogenetics and Evolution

Serra A-A, Couée I, Heijnen D, Michon-Coudouel S, Sulmon C and Gouesbet G (2015) - Genome-Wide Transcriptional Profiling and Metabolic Analysis Uncover Multiple Molecular Responses of the Grass Species Lolium perenne Under Low-Intensity Xenobiotic Stress. Front. Plant Sci. 6:1124. doi: 10.3389/fpls.2015.01124

Savary CC, Jiang X, Aubry M, Jossé R, Kopp-Schneider A, Hewitt P, Guillouzo A. (2015) - Transcriptomic analysis of untreated and drug-treated differentiated HepaRG cells over a 2-week period. (2015) -  Toxicol In Vitro.;30 :27-35. doi: 10.1016/j.tiv.2014.12.019.

de Tayrac M, Roth MP, Jouanolle AM, Coppin H, le Gac G, Piperno A, Férec C, Pelucchi S, Scotet V, Bardou-Jacquet E, Ropert M, Bouvet R, Génin E, Mosser J, Deugnier Y (2015) - Genome-wide association study identifies TF as a significant modifier gene of iron metabolism in HFE hemochromatosis. J Hepatol. 2015 Mar; 62(3):664-72. doi: 10.1016/j.jhep.2014.10.017. PMID: 25457201


Plate-forme citée ou remerciée :

Gely-Pernot A., Hao C., Becker E., Stuparevic I., Kervarrec C., Chalmel F., Primig M., Jégou B. and Smagulova F. (2015) - The epigenetic processes of meiosis in male mice are broadly affected by the widely used herbicide atrazine. BMC Genomics; 16:885. doi 10.1186/s12864-015-2095-y - PDF

Boutte J, Aliaga B, Lima O, Ferreira de Carvalho J, Ainouche A, Macas J, Rousseau-Gueutin M, Coriton O, Ainouche M, Salmon A. (2015) - Haplotype Detection from Next-Generation Sequencing in High-Ploidy-Level Species: 45S rDNA Gene Copies in the Hexaploid Spartina maritima. G3 (Bethesda).;6(1):29-40. doi: 10.1534/g3.115.023242.

Caron G, Hussein M, Kulis M, Delaloy C, Chatonnet F, Pignarre A, Avner S, Lemarié M, Mahé EA, Verdaguer-Dot N, Queirós AC, Tarte K, Martín-Subero JI, Salbert G, Fest T. (2015) - Cell-Cycle-Dependent Reconfiguration of the DNA Methylome during Terminal Differentiation of Human B Cells into Plasma Cells. Cell Rep.;13(5):1059-71. doi: 10.1016/j.celrep.2015.09.051. Epub 2015 Oct 22. PMID: 26565917

Gauthier J-P, Outreman Y, Mieuzet L, Simon J-C (2015) - Bacterial Communities Associated with Host-Adapted Populations of Pea Aphids Revealed by Deep Sequencing of 16S Ribosomal DNA. PLoS ONE 10(3): e0120664. Doi:10.1371/ journal.pone.0120664

Gely-Pernot A, Hao C, Becker E, Stuparevic I, Kervarrec C, Chalmel F, Primig M, Jégou B and Fatima Smagulova F. (2015) - The epigenetic processes of meiosis in male mice are broadly affected by the widely used herbicide atrazine. ; BMC Genomics. DOI: 10.1186/s12864-015-2095-y.

Nunes FL, Aquilina L, de Ridder J, Francez AJ, Quaiser A, Caudal JP, Vandenkoornhuyse P, Dufresne A. (2015) - Time-scales of hydrological forcing on the geochemistry and bacterial community structure of temperate peat soils. Sci. Rep. 5, 14612; doi: 10.1038/srep14612

Quaiser A, Dufresne A, Ballaud F, Roux S, Zivanovic Y, Colombet J, Sime-Ngando T and Francez A-J (2015) - Diversity and comparative genomics of Microviridae in Sphagnum- dominated peatlands. Front. Microbiol. 6:375. doi: 10.3389/fmicb.2015.00375
Sassi M, Augagneur Y, Mauro T, Ivain L, Chabelskaya S, Hallier M, Sallou O, Felden B. (2015) - SRD: a Staphylococcus regulatory RNA database. RNA.;21(5):1005-17. doi: 10.1261/rna.049346.114.

Sassi M, Sharma D, Brinsmade SR, Felden B, Augagneur Y. (2015) - Genome sequence of the clinical isolate Staphylococcus aureus subsp. aureus strain UAMS-1. Genome Announc 3(1):e01584-14. doi:10.1128/genomeA.01584-14.

 




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